Pymol tutorial ucla Patch#

Pov4Grasp : a patch version of POV-ray with direct support for GRASP surfaces.

Jmol, a free, opensource molecular viewer written in Java.

CONSCRIPT: a programm for generating electron density isosurfaces.

Pymol tutorial ucla verification#

SAVES: Structure Analysis and VErification Server, at UCLA.

NQ-Flipper: visualization and correction of unfavorable/incorrect Asn and Gln s/c rotamers.

Electron Density Server (EDS) at Uppsala University.

DDQ (Difference Density Quality), validation tool to assess the local and global correctness of macromolecular structures.

Heavy Atom Databases at the Shapiro Lab.

PHASER : macromolecular crystal structures phasing with maximum likelihood methods.

MrBUMP: automated Molecular Replacement.

MoRDa: Automatic Molecular Replacement Pipeline.

CaspR, automated approach for molecular replacement.

Balbes, automatic molecular replacement pipeline.

TEXTAL : Pattern Recognition System for Interpreting Electron Density Maps.

HKL2MAP graphical interface by Thomas Schneider's group.

Allows to generate external restraints for use in the crystallographic refinement.

ProSMART: conformation-independent structural comparison of protein chains.

User's manual at the ccp4 documentation.

qFIT Server: Multiconformer modeling by constrained fitting of rotamer occupancies.

Computational Crystallography Newsletter.

PHENIX : Python-based Hierarchical ENvironment for Integrated Xtallography.HIC-Up (Hetero-compound Information Centre - Uppsala).STARANISO: Anisotropy of Diffraction Limits and Bayesian Estimation of Structure Amplitudes.EFRESOL: analysis of effective and optical resolution of diffraction data.Diffraction Anisotropy Server: Ellipsoidal Truncation and Anisotropic Scaling.BnP (The Buffalo and Pittsburgh Interface for complete protein phasing).Auto-Rickshaw: EMBL-HH Automated Crystal Structure Determination Platform.ARCIMBOLDO: Ab Initio protein solution far below atomic resolution.XDSGUI: graphical user interface for XDS.

XDSAPP: a GUI for the processing of diffraction data using XDS.Untangle: separate overlapping diffraction patterns.DIALS: Diffraction Integration for Advance Light Sources.ADXV: a program to display X-Ray diffraction images.SASBDB: Small Angle Scattering Biological Data Bank.BIOISIS: Database of SAXS of Biological macromolecules.BMRDB (Biological Magnetic Resonance Data Bank).(Inspired from Pereda's Lab) Crystallizability predictors :)